better software perhaps.

I am currently using edison, in fl to cut out my loops. I tranfer the wav's to my mpc 1000, although the loops sound perfect in sequence in fl, they do not on the mpc, there seems to be a slight studder inbetween each sequence. I almost completely fixed this issue by leaving a blank spot on both ends of each loop then manually going in and using the mpc to cut each end by zooming in as far as the mpc will allow. Ex pad one blank no sound, pad two loop, pad three blank, but no matter what pad three always leaves behind this tiny bit of sound, which is not there while im in the chopping mode only when i export it as a program. Also i am using the free version of jjos. What could be my issue, and how to resolve it.

well, u could always use your mpc for what it is...a sampler.

stop importing your loops and sample em straight to the mpc and loop in the machine. trim the start and end points, find your loops, find your tempo and get it poppin dude.