Effect info is saved with the program file.
When you have your effects how you want them, save a new program file and your effect settings will be saved along with it.
If you use a different name for your new file, you can keep the original file intact in case you still need it.
Also,... if you have all your samples already saved, then save the new program file without sounds [PROGRAM ONLY] , then no need to save the same sounds a second time.